removed_seqs

20171019-Coleman-Connectivity-P1P4_Barcodes.txt

20171019-Coleman-Connectivity-P1P4_ObservedProportions.temp

314_Coleman-Connectivity_P1P4.174.174-RG.bam

314_Coleman-Connectivity_P1P4.174.174.bam.log

315_Coleman-Connectivity_P1P4.R1.fq.gz

316_Coleman-Connectivity_P1P4.R2.fq.gz

317_Coleman-Connectivity_P1P4.174.174-RG.phiX

318_Coleman-Connectivity_P1P4.174.174-RG.phiX

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320_Coleman-Connectivity_P1P4.174.174-RG.bam.bai

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322_Coleman-Connectivity_P1P4.174.174-RG.bam.bai

322_Coleman-Connectivity_P1P4.174.174-RG.phiX

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327_Coleman-Connectivity_P1P4.R1.fq.gz

328_Coleman-Connectivity_P1P4.174.174.bam.log

337_Coleman-Connectivity_P1P4.R1.fq.gz

337_Coleman-Connectivity_P1P4.R2.fq.gz

NumPhixReads.txt

NumTotalReads.txt

bwa.313_Coleman-Connectivity_P1P4.174.174.log

bwa.320_Coleman-Connectivity_P1P4.174.174.log

bwa.324_Coleman-Connectivity_P1P4.174.174.log

dDocent.runs

reference.174.174.fasta

reference.174.174.fasta.bwt

20171019-Coleman-Connectivity-P1P4_RemovedReport.csv

314_Coleman-Connectivity_P1P4.R1.fq.gz

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325_Coleman-Connectivity_P1P4.174.174-RG.bam.bai

330_Coleman-Connectivity_P1P4.R1.fq.gz

331_Coleman-Connectivity_P1P4.174.174-RG.phiX

331_Coleman-Connectivity_P1P4.R2.fq.gz

332_Coleman-Connectivity_P1P4.R2.fq.gz

bwa.314_Coleman-Connectivity_P1P4.174.174.log

bwa.326_Coleman-Connectivity_P1P4.174.174.log

bwa.328_Coleman-Connectivity_P1P4.174.174.log

process_radtags.csv

reference.174.174.fasta.sa

slurm-23734.out

20171019-Coleman-Connectivity-P1P4_ReadReport.csv

314_Coleman-Connectivity_P1P4.174.174-RG.bam.bai

314_Coleman-Connectivity_P1P4.174.174-RG.phiX

315_Coleman-Connectivity_P1P4.174.174-RG.phiX

315_Coleman-Connectivity_P1P4.R2.fq.gz

316_Coleman-Connectivity_P1P4.R1.fq.gz

317_Coleman-Connectivity_P1P4.174.174.bam.log

317_Coleman-Connectivity_P1P4.R1.fq.gz

318_Coleman-Connectivity_P1P4.174.174.bam.log

318_Coleman-Connectivity_P1P4.R2.fq.gz

319_Coleman-Connectivity_P1P4.174.174-RG.bam

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327_Coleman-Connectivity_P1P4.174.174.bam.log

328_Coleman-Connectivity_P1P4.174.174-RG.phiX

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329_Coleman-Connectivity_P1P4.174.174-RG.phiX

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334_Coleman-Connectivity_P1P4.174.174-RG.phiX

334_Coleman-Connectivity_P1P4.R1.fq.gz

336_Coleman-Connectivity_P1P4.R2.fq.gz

339_Coleman-Connectivity_P1P4.174.174-RG.phiX

339_Coleman-Connectivity_P1P4.R1.fq.gz

340_Coleman-Connectivity_P1P4.R1.fq.gz

bwa.315_Coleman-Connectivity_P1P4.174.174.log

bwa.321_Coleman-Connectivity_P1P4.174.174.log

reference.174.174.fasta.pac

slurm-23754.out

20171019-Coleman-Connectivity-P1P4_NumPhixReads.csv

20171019-Coleman-Connectivity-P1P4_NumTotalReads.csv

313_Coleman-Connectivity_P1P4.174.174.bam.log

313_Coleman-Connectivity_P1P4.R2.fq.gz

314_Coleman-Connectivity_P1P4.R2.fq.gz

315_Coleman-Connectivity_P1P4.174.174-RG.bam.bai

315_Coleman-Connectivity_P1P4.174.174.bam.log

317_Coleman-Connectivity_P1P4.R2.fq.gz

318_Coleman-Connectivity_P1P4.174.174-RG.bam

319_Coleman-Connectivity_P1P4.R1.fq.gz

320_Coleman-Connectivity_P1P4.174.174-RG.phiX

324_Coleman-Connectivity_P1P4.174.174-RG.bam

324_Coleman-Connectivity_P1P4.174.174-RG.bam.bai

325_Coleman-Connectivity_P1P4.R1.fq.gz

325_Coleman-Connectivity_P1P4.R2.fq.gz

326_Coleman-Connectivity_P1P4.174.174-RG.phiX

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328_Coleman-Connectivity_P1P4.174.174.bam

328_Coleman-Connectivity_P1P4.R2.fq.gz

332_Coleman-Connectivity_P1P4.174.174-RG.phiX

332_Coleman-Connectivity_P1P4.R1.fq.gz

333_Coleman-Connectivity_P1P4.R2.fq.gz

336_Coleman-Connectivity_P1P4.174.174-RG.phiX

337_Coleman-Connectivity_P1P4.174.174-RG.phiX

338_Coleman-Connectivity_P1P4.R2.fq.gz

340_Coleman-Connectivity_P1P4.174.174-RG.phiX

bwa.316_Coleman-Connectivity_P1P4.174.174.log

bwa.322_Coleman-Connectivity_P1P4.174.174.log

bwa.325_Coleman-Connectivity_P1P4.174.174.log

namelist.174.174

reference.174.174.fasta.ann

reference.174.174.fasta.fai

313_Coleman-Connectivity_P1P4.174.174-RG.bam

313_Coleman-Connectivity_P1P4.174.174-RG.bam.bai

313_Coleman-Connectivity_P1P4.174.174-RG.phiX

315_Coleman-Connectivity_P1P4.174.174-RG.bam

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322_Coleman-Connectivity_P1P4.174.174-RG.bam

325_Coleman-Connectivity_P1P4.174.174.bam.log

326_Coleman-Connectivity_P1P4.174.174-RG.bam

326_Coleman-Connectivity_P1P4.174.174.bam.log

327_Coleman-Connectivity_P1P4.174.174-RG.phiX

329_Coleman-Connectivity_P1P4.R2.fq.gz

331_Coleman-Connectivity_P1P4.R1.fq.gz

334_Coleman-Connectivity_P1P4.R2.fq.gz

336_Coleman-Connectivity_P1P4.R1.fq.gz

338_Coleman-Connectivity_P1P4.R1.fq.gz

index.174.174.log

313_Coleman-Connectivity_P1P4.R1.fq.gz

316_Coleman-Connectivity_P1P4.174.174-RG.bam

316_Coleman-Connectivity_P1P4.174.174-RG.phiX

317_Coleman-Connectivity_P1P4.174.174-RG.bam.bai

318_Coleman-Connectivity_P1P4.R1.fq.gz

319_Coleman-Connectivity_P1P4.174.174-RG.phiX

321_Coleman-Connectivity_P1P4.174.174-RG.bam

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322_Coleman-Connectivity_P1P4.R1.fq.gz

322_Coleman-Connectivity_P1P4.R2.fq.gz

324_Coleman-Connectivity_P1P4.R2.fq.gz

325_Coleman-Connectivity_P1P4.174.174-RG.phiX

327_Coleman-Connectivity_P1P4.R2.fq.gz

329_Coleman-Connectivity_P1P4.R1.fq.gz

338_Coleman-Connectivity_P1P4.174.174-RG.phiX

339_Coleman-Connectivity_P1P4.R2.fq.gz

340_Coleman-Connectivity_P1P4.R2.fq.gz

bwa.317_Coleman-Connectivity_P1P4.174.174.log

bwa.318_Coleman-Connectivity_P1P4.174.174.log

bwa.319_Coleman-Connectivity_P1P4.174.174.log

bwa.327_Coleman-Connectivity_P1P4.174.174.log

header.temp

namelistfr.174.174

reference.174.174.fasta.amb

slurm-23711.out

logfiles